rename pkg
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4 changed files with 17 additions and 9 deletions
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@ -34,10 +34,10 @@ steps:
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# download latest package version (avoid having to rebuild image every time)
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# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
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- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/arm64-r-binaries.git .
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- rm -rf /mnt/cache/R-pkgs/00LOCK-arm64-r-binaries /mnt/cache/R-pkgs/00LOCK-rBinaries
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- rm -rf /mnt/cache/R-pkgs/00LOCK-arm64-r-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
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# for some reason this one is often corrupt on redhat-9
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- rm -rf /mnt/cache/R-pkgs/RPostgres /mnt/cache/pkgcache/R/pkgcache
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- R -q -e 'devtools::install(); packageVersion("rBinaries")'
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- R -q -e 'devtools::install(); packageVersion("bincraftR")'
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- mkdir -p /root/.R && /bin/bash -c 'echo -e "CXX_STD = CXX14\nCC=ccache gcc\nCPP=ccache gcc\nCXX=ccache g++\nCXX11=ccache g++\nCXX14=ccache g++\nCXX17=ccache g++\nF77=ccache /usr/bin/gfortran\nFC=ccache /usr/bin/gfortran" >> /root/.R/Makevars'
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# manually install some packages into the cache so that some builds don't fail
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# Hmisc -> ABCanalysis
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@ -45,7 +45,7 @@ steps:
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# more complicated system dependencies which pak cannot resolve
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- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
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# set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point
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- R -q -e 'options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL, repos = structure(c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/stable"))); pkgs = tools::CRAN_package_db()[[1]][${BLOCK}]; pkgs = setdiff(pkgs, c("biplotbootGUI", "cncaGUI", "dynBiplotGUI", "ade4TkGUI", "BlockmodelingGUI", "cncaGUI", "EventDetectGUI", "irtGUI", "KappaGUI", "magickGUI", "miniGUI", "multibiplotGUI", "TextMiningGUI", "later", "RclusTool", "Rcmdr", "RcmdrMisc", "RcmdrPlugin.aRnova", "RcmdrPlugin.BiclustGUI", "RcmdrPlugin.BWS1", "RcmdrPlugin.BWS2", "RcmdrPlugin.BWS3", "RcmdrPlugin.cpd", "RcmdrPlugin.DCCV", "RcmdrPlugin.DCE", "RcmdrPlugin.depthTools", "RcmdrPlugin.DoE", "RcmdrPlugin.EACSPIR", "RcmdrPlugin.EBM", "RcmdrPlugin.EcoVirtual", "RcmdrPlugin.Export", "RcmdrPlugin.EZR", "RcmdrPlugin.FactoMineR", "RcmdrPlugin.GWRM", "RcmdrPlugin.HH", "RcmdrPlugin.KMggplot2", "RcmdrPlugin.MA", "RcmdrPlugin.MPAStats", "RcmdrPlugin.NMBU", "RcmdrPlugin.orloca", "RcmdrPlugin.PcaRobust", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.ROC", "RcmdrPlugin.sos" , "RcmdrPlugin.survival", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.TeachStat", "RcmdrPlugin.temis", "RcmdrPlugin.UCA" , "RcmdrPlugin.WorldFlora", "sf", "StratigrapheR", "tcltk2", "TVMM", "uHMM", "RInno")); library(rBinaries); future::plan("multisession", workers = 4, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = T, platform = "${PLATFORM}"))'
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- R -q -e 'options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL, repos = structure(c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/stable"))); pkgs = tools::CRAN_package_db()[[1]][${BLOCK}]; pkgs = setdiff(pkgs, c("biplotbootGUI", "cncaGUI", "dynBiplotGUI", "ade4TkGUI", "BlockmodelingGUI", "cncaGUI", "EventDetectGUI", "irtGUI", "KappaGUI", "magickGUI", "miniGUI", "multibiplotGUI", "TextMiningGUI", "later", "RclusTool", "Rcmdr", "RcmdrMisc", "RcmdrPlugin.aRnova", "RcmdrPlugin.BiclustGUI", "RcmdrPlugin.BWS1", "RcmdrPlugin.BWS2", "RcmdrPlugin.BWS3", "RcmdrPlugin.cpd", "RcmdrPlugin.DCCV", "RcmdrPlugin.DCE", "RcmdrPlugin.depthTools", "RcmdrPlugin.DoE", "RcmdrPlugin.EACSPIR", "RcmdrPlugin.EBM", "RcmdrPlugin.EcoVirtual", "RcmdrPlugin.Export", "RcmdrPlugin.EZR", "RcmdrPlugin.FactoMineR", "RcmdrPlugin.GWRM", "RcmdrPlugin.HH", "RcmdrPlugin.KMggplot2", "RcmdrPlugin.MA", "RcmdrPlugin.MPAStats", "RcmdrPlugin.NMBU", "RcmdrPlugin.orloca", "RcmdrPlugin.PcaRobust", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.ROC", "RcmdrPlugin.sos" , "RcmdrPlugin.survival", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.TeachStat", "RcmdrPlugin.temis", "RcmdrPlugin.UCA" , "RcmdrPlugin.WorldFlora", "sf", "StratigrapheR", "tcltk2", "TVMM", "uHMM", "RInno")); library(bincraftR); future::plan("multisession", workers = 4, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = T, platform = "${PLATFORM}"))'
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backend_options:
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kubernetes:
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### PROD
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@ -85,10 +85,10 @@ steps:
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# commands:
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# # download latest package version (avoid having to rebuild image every time)
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# # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
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# - R -q -e 'pak::local_install(); packageVersion("rBinaries")'
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# - R -q -e 'pak::local_install(); packageVersion("bincraftR")'
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# - R -q -e 'pak::pak(c("dyfanjones/s3fs", "pat-s/desc@description-from-remote", "pat-s/cranlike@s3"))'
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# - cd /mnt/cache/packages
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# - R -q -e 'options(crayon.enabled = TRUE); library(rBinaries); upload_package_index()'
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# - R -q -e 'options(crayon.enabled = TRUE); library(bincraftR); upload_package_index()'
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# backend_options:
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# kubernetes:
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# resources:
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@ -1,4 +1,4 @@
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Package: rBinaries
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Package: bincraftR
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Title: Toolbox for building R package binaries on Linux
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Version: 0.0.0.9000
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Authors@R:
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11
README.md
11
README.md
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@ -2,7 +2,7 @@
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## Workflow
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Most of the work is done through the R package `rBinaries`.
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Most of the work is done through the R package `bincraftR`.
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- `build_binary_package()`
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- `install_system_dependencies()`
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@ -146,4 +146,11 @@ Dependency not available: Either because the dependency was not declared or erro
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## Packages skipped on purpose
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- `biplotbootGUI` - requires Bwidget which is hardly installable on any distribution and causes a lot of issues due to the need of a virtual frame buffer
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- `biplotbootGUI` - requires Bwidget which is hardly installable on any distribution and causes a lot of issues due to the need of a virtual frame buffer
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## CDN
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- Perma-cache enabled for three different regions (DE, US, Asia) + smart cache for other edge servers
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- `CacheControl = "no-cache"` for all PACKAGES* files to ensure users always get the latest version (as these files change daily)
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-
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@ -12,7 +12,8 @@ archive_package(
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local_build_root = ".",
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endpoint = "https://s3.eu-central-003.backblazeb2.com",
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region = "eu-central-003",
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bucket = "devxy-arm64-r-binaries"
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bucket = "devxy-arm64-r-binaries",
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pause = NULL
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)
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}
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\description{
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