diff --git a/.woodpecker/build.yaml b/.woodpecker/build.yaml index 436edc0..a10cdc6 100644 --- a/.woodpecker/build.yaml +++ b/.woodpecker/build.yaml @@ -6,7 +6,7 @@ skip_clone: true matrix: include: - PLATFORM: rhel-9 - BLOCK: 723:1050 + BLOCK: 903:920 # - PLATFORM: rhel-9 # BLOCK: 1051:1450 # - PLATFORM: rhel-9 @@ -42,11 +42,11 @@ steps: - mkdir -p /root/.R && echo -e "CXX_STD = CXX14\nCC=ccache gcc\nCPP=ccache gcc\nCXX=ccache g++\nCXX11=ccache g++\nCXX14=ccache g++\nCXX17=ccache g++\nF77=ccache /usr/bin/gfortran\nFC=ccache /usr/bin/gfortran" > /root/.R/Makevars # manually install some packages into the cache so that some builds don't fail # Hmisc -> ABCanalysis - - R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE, PKG_SYSREQS_PLATFORM = "redhat-9"); pak::pak(c("Hmisc", "pls", "abd", "doRNG", "devtools"))' + # - R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE, PKG_SYSREQS_PLATFORM = "redhat-9"); pak::pak(c("Hmisc", "pls", "abd", "doRNG", "devtools"))' # more complicated system dependencies which pak cannot resolve - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point - - R -q -e 'options(crayon.enabled = TRUE, Ncpus = 6, future.globals.onReference = "error", repos = structure(c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/stable"))); pkgs = tools::CRAN_package_db()[[1]][${BLOCK}]; library(rBinaries); future::plan("multisession", workers = 6, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE))' + - R -q -e 'options(crayon.enabled = TRUE, Ncpus = 6, future.globals.onReference = "error", repos = structure(c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/stable"))); pkgs = tools::CRAN_package_db()[[1]][${BLOCK}]; library(rBinaries); future::plan("multisession", workers = 6, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = TRUE, force = TRUE))' backend_options: kubernetes: resources: diff --git a/R/build_binaries.R b/R/build_binaries.R index e961aed..034969b 100644 --- a/R/build_binaries.R +++ b/R/build_binaries.R @@ -167,7 +167,7 @@ build_single_tag <- function( if (!file.exists(sprintf("%s/%s_%s.tar.gz", dir_out_bin, package_name, tag))) { if (debug) { - cli::cli_alert_info('{.fun build_single_tag}: Moving package from {.path {sprintf("%s/%s*.tar.gz", dir_out_bin, package_name)}} to {.path {sprintf("%s/%s_%s.tar.gz", dir_out_bin, package_name, tag)}}') + cli::cli_alert_info('{.fun build_single_tag}: Moving package from {.path {sprintf("%s/%s_%s_R_aarch64-unknown-linux-gnu.tar.gz", dir_out_bin, package_name, tag))}} to {.path {sprintf("%s/%s_%s.tar.gz", dir_out_bin, package_name, tag)}}') } # remove _aarch64-unknown-linux-gnu part in filename fs::file_move(